Metabolic Systems Research Team

Laboratories

Publications

2020

Original Papers

Siriwach,R., Matsuda,F., Yano,K. and Hirai,M.Y. (2020) Drought Stress Responses in Context-Specific Genome-Scale Metabolic Models of Arabidopsis thaliana Metabolites, 10 ; 159, DOI: 10.3390/metabo10040159.

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2019

Original Papers

Izumi,Y., Matsuda, F., Hirayama, A., Ikeda, K., Kita, Y., Horie, K., Saigusa, D., Saito, K., Sawada, Y., Nakanishi, H., Okahashi, N., Takahashi, M., Nakao, M., Hata,K., Hoshi, Y., Morihara, M., Tanabe, K., Bamba, T. and Oda, O. (2019) Inter-laboratory comparison of metabolite measurements for metabolomics data integration. Metabolites, 9 ; 257, DOI: 10.3390/metabo9110257.

Abstract

Sarath, E., Ezaki, K., Sasaki, T., Maekawa, Y., Sawada, Y., Hirai, M.Y., Soejima A. and Tsukaya, H. (2019) Morphological characterization of domatium development in Callicarpa saccate. Annals of Botany, DOI: 10.1093/aob/mcz193.

Abstract

Kozuka, T., Sawada, Y., Imai, H., Kanai, M., Hirai, M.Y., Mano, S., Uemura, M., Nishimura, M., Kusaba, M. and Nagatani, A.(2019) Regulation of sugar and storage oil metabolism by phytochrome during de-etiolation Plant Physiology, DOI: 10.1104/pp.19.00535.

Abstract

Boerzhijin, S., Makino, Y., Hirai, M.Y., Sotome, I. and Yoshimura, M.(2019) Effect of perforation-mediated modified atmosphere packaging on the quality and bioactive compounds of soft kale (Brassica oleracea L. convar. acephala (DC) Alef. var. sabellica L.) during storage Food Packaging and Shelf Life, 23 ; , DOI: 10.1016/j.fpsl.2019.100427.

Abstract

Sawada, Y., Sato, M., Okamoto, M., Masuda, J., Yamaki, S., Tamari, M., Tanokashira, Y., Kishimoto, S., Ohmiya, A., Abe, T. and Hirai, M.Y.(2019) Metabolome-based discrimination of chrysanthemum cultivars for the efficient generation of flower color variations in mutation breeding. Metabolomics, 15 ; 118, DOI: 10.1007/s11306-019-1573-7.

Abstract

Sugiyama, R. and Hirai, M.Y.(2019) Atypical Myrosinase as a Mediator of Glucosinolate Functions in Plants. Front Plant Sci., 10 ; 1008, DOI: 10.3389/fpls.2019.01008.

Abstract

Nakajima, T., Kawano, Y., Ohtsu, I., Maruyuama-Nakashita, A., Allahham, A., Sato, M., Sawada, Y., Hirai, M.Y., Yokoyama, T. and Ohkama-Ohtsu, N.(2019) Effects of Thiosulfate as a Sulfur Source on Plant Growth, Metabolites Accumulation and Gene Expression in Arabidopsis and Rice. Plant Cell Physiol., 60 ; 1683-1701, DOI: 10.1093/pcp/pcz082.

Abstract

Onda, Y., Inoue, K., Sawada, Y., Shimizu, M., Takahagi, K., Uehara-Yamaguchi, Y., Hirai, M.Y., Garvin, D.F. and Mochida, K.(2019) Genetic Variation for Seed Metabolite Levels in Brachypodium distachyon. Int J. Mol Sci., 20 ; 2348, DOI: 10.3390/ijms20092348.

Abstract

Okamura, Y., Tsuzuki, N., Kuroda, S., Sato, A., Sawada, Y., Hirai, M.Y. and Murakami, M.(2019) Interspecific Differences in the Larval Performance of Pieris Butterflies (Lepidoptera: Pieridae) Are Associated with Differences in the Glucosinolate Profiles of Host Plants. J Insect Sci., 19 ; 2, DOI: 10.1093/jisesa/iez035.

Abstract

Okamura, Y,. Sato, A., Tsuzuki, N., Sawada, Y., Hirai, M.Y., Heidel-Fischer, H., Reichelt, M., Murakami, M. and Vogel, H.(2019) Differential regulation of host plant adaptive genes in Pieris butterflies exposed to a range of glucosinolate profiles in their host plants. Sci Rep., 9 ; 7256, DOI: 10.1038/s41598-019-43703-8.

Abstract

Nakazaki, A., Yamada, K., Kunieda, T., Sugiyama, R., Hirai, M.Y., Tamura, K., Hara-Nishimura, I. and Shimada, T.(2019) Leaf Endoplasmic Reticulum Bodies Identified in Arabidopsis Rosette Leaves Are Involved in Defense against Herbivory. Plant Physiol., 179 ; 1515-1524, DOI: 10.1104/pp.18.00984.

Abstract

Abdelrahman, M., Hirata, S., Sawada, Y., Hirai, M.Y., Sato, S., Hirakawa, H., Mine, Y., Tanaka. K. andShigyo, M.(2019) Widely targeted metabolome and transcriptome landscapes of Allium fistulosum-A. cepa chromosome addition lines revealed a flavonoid hot spot on chromosome 5A. Sci Rep., 9 ; 3541, DOI: 10.1038/s41598-019-39856-1.

Abstract

Tada, Y., Kawano, R., Komatsubara, S., Nishimura, H., Katsuhara, M., Ozaki, S., Terashima, S., Yano, K., Endo, C., Sato, M., Okamoto, M., Sawada, Y., Hirai, M.Y. and Kurusu, T.(2019) Functional screening of salt tolerance genes from a halophyte Sporobolus virginicus and transcriptomic and metabolomic analysis of salt tolerant plants expressing glycine-rich RNA-binding protein. Plant Sci., 278 ; 54-63, DOI: 10.1016/j.plantsci.2018.10.019.

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2018

Original Papers

Hirai, M.Y. and Shiraishi, F.(2018) Using metabolome data for mathematical modeling of plant metabolic systems. Curr Opin Biotechnol. , 54 ; 138-144, DOI: 10.1016/j.copbio.2018.08.005.

Abstract

Watanabe, S., Sato, M., Sawada, Y., Tanaka, M., Matsui, A., Kanno, Y., Hirai, M.Y., Seki, M., Sakamoto, A. and Seo, M.(2018) Arabidopsis molybdenum cofactor sulfurase ABA3 contributes to anthocyanin accumulation and oxidative stress tolerance in ABA-dependent and independent ways. Sci Rep., 8 ; 16592. doi: 10.1038/s41598-018-34862-1.

Abstract

Ferjani, A., Kawade, K., Asaoka, M., Oikawa, A., Okada, T., Mochizuki, A., Maeshima, M., Hirai, M.Y., Saito, K. and Tsukaya, H.(2018) Pyrophosphate inhibits gluconeogenesis by restricting UDP-glucose formation in vivo. Sci Rep., 8 ; 14696, DOI: 10.1038/s41598-018-32894-1.

Abstract

Kawade, K., Li, Y., Koga, H., Sawada, Y., Okamoto, M., Kuwahara, A., Tsukaya, H. and Hirai, M.Y.(2018) The cytochrome P450 CYP77A4 is involved in auxin-mediated patterning of the Arabidopsis thaliana embryo. Development., 145 ; 168369, DOI: 10.1242/dev.168369.

Abstract

Akashi, H., Okamura, E., Nishihama, R.,Kohchi, T. and Hirai, M.Y.(2018) Identification and Biochemical Characterization of the Serine Biosynthetic Enzyme 3-Phosphoglycerate Dehydrogenase in Marchantia polymorpha. Front. Plant Sci., DOI: 10.3389/fpls.2018.00956.

Abstract

Vergara, F., Itouga, M., Becerra, R.G., Hirai, M.Y., Ordaz-Ortiz, J.J. and Winkler, R.(2018) Funaria hygrometrica Hedw. elevated tolerance to D2O: its use for the production of highly deuterated metabolites. Planta., 247 ; 405-412, DOI: 10.1007/s00425-017-2794-5.

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