Publications
2024
Editorial
Nobutaka Mitsuda, Hikaru Seki, Tsubasa Shoji, Masami Yokota Hirai (2024) Preface to the special issue “Synthetic Biology and Bioproduction in Plants”,
Plant Biotechnology 41: 169-171.
LINK
Li-Beisson, Y., Hirai, M.Y., Nakamura, Y. (2024) Plant metabolomics. Journal of Experimental Botany 75: 1651–1653.
LINK
Original Papers
Okada, M., Barras, C., Toda, Y., Hamazaki, K., Ohmori, Y., Yamasaki, Y., Takahashi, H., Takanashi, H., Tsuda, M. and Hirai, M.Y. , et al.(2024) High-Throughput Phenotyping of Soybean Biomass: Conventional Trait Estimation and Novel Latent Feature Extraction Using UAV Remote Sensing and Deep Learning Models,
Plant Phenomics. 2024;6:0244, DOI: 10.34133/plantphenomics.0244.
Abstract
Fuji, Y., Matsufuji, H. and Hirai, M.Y. (2024) Distribution, biosynthesis, and synthetic biology of phenylethanoid glycosides in the order Lamiales,
Plant Biotechnology. 41: 231-241, DOI: 10.5511/plantbiotechnology.24.0720a.
Abstract
Kim, J.-S., Sato, M., Kojima, M., Asrori,M.I., Uehara-Yamaguchi, Y., Takebayashi, Y., Do, T.N., Do, T.Y., Nguyen, K.-O.T., Sakakibara, H., Mochida, K., Ogita, S. and Hirai, M.Y. (2024) Multi-omics signatures of diverse plant callus cultures,
Plant Biotechnology. 41: 309-314, DOI: 10.5511/plantbiotechnology.24.0719a.
Abstract
Ishii, K., Kazama, Y., Hirano, T., Fawcett, J.A., Sato, M., Hirai, M.Y., Sakai, F., Shirakawa, Y., Ohbu, S. and Abe, T.(2024) Genomic view of heavy-ion-induced deletions associated with distribution of essential genes in
Arabidopsis thaliana.
Front Plant Sci.. 15:1352564. DOI: 10.3389/fpls.2024.1352564.
Abstract
Tabeta, H. and Hirai, M.Y.(2024)
L-2-Aminopimelic acid acts as an auxin mimic to induce lateral root formation across diverse plant species.
FEBS Letters. DOI:10.1002/1873-3468.14908
Abstract
Nguyen, P.N., Do, T.Y., Do, T.N., Gontier, E., Nguyen, H.T.L., Thi, V.A.L., Mai, N.T.P., Sato, M., Hirai, M.Y. and Nguyen, K.-O.T.(2024) Widely targeted metabolomics reveals the species-specific, matureness-specific and post-harvest-specific discriminations in the chemical profiles of Vietnamese endemic golden camellias.
Int J Food Sci Technol. DOI:10.1111/ijfs.17071
Abstract
Uzaki, M., Mori, T., Sato, M., Wakazaki, M., Takeda-Kamiya, N., Yamamoto, K., Murakami, A., Guerrero, D.A.S., Shichijo, C., Ohnishi, M., Ishizaki, K., Fukaki, H., O'Connor, S.E., Toyooka, K., Mimura, T. and Hirai, M.Y.(2024) Integration of cell differentiation and initiation of monoterpenoid indole alkaloid metabolism in seed germination of
Catharanthus roseus. New Phytol. DOI:10.1111/nph.19662
Abstract
Miyaji, S., Ito, T., Kitaiwa, T., Nishizono, K., Agake, S.-I., Harata, H., Aoyama, H., Umahashi, M., Sato, M., Inaba, J., Fushinobu, S., Yokoyama, T., Murayama-Nakashita, A.,
Hirai, M.Y. and Ohkama-Ohtsu, N.(2024) N
2-Acetylornithine deacetylase functions as a Cys-Gly dipeptidase in the cytosolic glutathione degradation pathway in Arabidopsis thaliana
Plant J.. DOI: 10.1111/tpj.16700.
Abstract
Wang, M., Tabeta, H., Ohtaka, K., Kuwahara, A., Nishihama, R., Ishikawa, T., Toyooka, K., Sato, M., Wakazaki, M., Akashi, H., Tsugawa, H., Shoji, T., Okazaki, Y., Yoshida, K., Sato, R., Ferjani, A., Kohchi, T., Hirai, M.Y. (2024) The phosphorylated pathway of serine biosynthesis affects sperm, embryo, and sporophyte development, and metabolism in Marchantia polymorpha.
Commun Biol. DOI: 10.1038/s42003-023-05746-6.
Abstract
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2023
Editorial
Hirai, M.Y., Mizutani, M. and Nakamura, Y.(2023) Revisiting Plant Metabolite Functions.
Plant Cell Physiol.,DOI:10.1093/pcp/pcad155.
LINK
Original Papers
Horikoshi, M., Harada, K., Tsuno, S., Kitaguchi, T., Hirai, M.Y., Matsumoto, M., Terada, S. and Tsuboi, T.(2023)Distinct lactate metabolism between hepatocytes and myotubes revealed by live cell imaging with genetically encoded indicators.
Biochem Biophys Res Commun.,DOI:10.1016/j.bbrc.2023.149416.
Abstract
Nguyen, K.-O.T., Do, T.-N, Dang, K.-P., Sato, M. and Hirai, M.Y.(2023)Single-grain-based widely targeted metabolomics profiling of sixty-four accessions of Japanese wild soybean (
Glycin soja Sieb. Et Zucc.).
IFST.,DOI:10.1111/ijfs.16654.
Abstract
Tsuno, S., Harada, K., Horikoshi.M., Mita, M., Kitaguchi, T., Hirai, M.Y., Matsumoto, M. and Tsuboi, T.(2023) Mitochondrial ATP concentration decreases immediately after glucose administration to glucose-deprived hepatocytes.
FEBS Open Bio.,DOI:10.1002/2211-5463.13744.
Abstract
Kawade, K., Tabeta, H., Ferjani, A. and Hirai, M.Y.(2023) The Roles of Functional Amino Acids in Plant Growth and Development.
Plant Cell Physiol.,DOI:10.1093/pcp/pcad071.
Abstract
Uchida, K., Kim, J.S., Sato, M., Tabeta, H., Mochida, K. and Hirai, M.Y.(2023) A metabolome genome-wide association study implicates histidine N-pi-methyltransferase as a key enzyme in N-methylhistidine biosynthesis in Arabidopsis thaliana.
Front. Plant Sci.,DOI:10.3389/fpls.2023.1201129.
Abstract
Fuji, Y., Uchida, K., Akashi, T., Ohtsuki, T., Matsufuji, H. and Hirai, M.Y.(2023) Molecular Identification of UDP-Sugar Dependent Glycosyltransferase and Acyltransferase Involved in the Phenylethanoid Glycoside Biosynthesis Induced by Methyl Jasmonate in Sesamum indicum L.
Plant Cell Physiol.,DOI:10.1093/pcp/pcad053.
Abstract
Miyamoto, H., Shigeta, K., Suda, W., Ichihashi, Y., Nihei, N., Matsuura, M., Tsuboi, A., Tominaga, N., Aono, M., Sato, M., Taguchi, S., Nakaguma, T., Tsuji, N., Ishii, C., Matsushita, T., Shindo, C., Ito, T., Kato, T., Kurotani, A., Shima, H., Moriya, S., Wada, S., Horiuchi, S., Satoh, T., Mori, K., Nishiuchi, T., Miyamoto, H., Kodama, H., Hattori, M., Ohno, H., Kikuchi, K. and Hirai, M.Y.(2023) An agroecological structure model of compost—soil—plant interactions for sustainable organic farming.
ISME Commun,DOI:10.1038/s43705-023-00233-9.
Abstract
Uchida, K. and Hirai, M.Y.(2023) A simple method for creating transgenic pea hairy roots using a Japanese pea cultivar and a Japanese Rhizobium radiobacter strain.
Plant Biotechnol., DOI:10.5511/plantbiotechnology.22.1219c
Abstract
Tojo, H., Tabeta, H., Gunji, S., Hirai, M.Y., David, P., Javot, H. and Ferjani, A.(2023). Roles of type II H+-PPases and PPsPase1/PECP2 in early developmental stages and PPi homeostasis of
Arabidopsis thalianaFront. Plant Sci., 14:1031426., DOI:10.3389/fpls.2023.1031426
Abstract
Tabeta, H., Gunji, S., Kawade, K. and Ferjani, A.(2023). Leaf-size control beyond transcription factors: Compensatory mechanisms
Front. Plant Sci., 13:1024945., DOI:10.3389/fpls.2022.1024945
Abstract
Toyooka, K., Goto,Y., Hashimoto, K., Wakazaki, M., Sato, M. and Hirai, M.Y.(2023) Endoplasmic Reticulum Bodies in the Lateral Root Cap are Involved in the Direct Transport of Beta-Glucosidase to Vacuoles.
Plant and Cell Physiology, pcac177, DOI:10.1093/pcp/pcac177
Abstract
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2022
Original Papers
Matsuse, K., Abdelrahman, M., Ariyanti, N. A., Tsuji, F., Hirata, S., Nakajima, T., Sato, M., Hirai, M.Y., Manochai, B. and Shigyo, M.(2022). Targeted Metabolome Profiling of Indonesian Shallots and Japanese Long-Day/Short-Day Bulb Onions.
Merabolites, DOI:10.3390/metabo12121260
Abstract
Tabeta, H., Higashi, Y., Okazaki, Y., Toyooka, K., Wakazaki, M., Sato, M., Saito, K., Hirai, M.Y. and Ferjani, A. (2022). Skotomorphogenesis exploits threonine to promote hypocotyl elongation.
Quantitative Plant Biology, DOI:10.1017/qpb.2022.19
Abstract
Guo, L., Zhao, W., Wang, Y., Yang, Y., Wei, C., Guo, J., Dai, J., Hirai, M.Y., Bao, A., Yang, Z., Chen, H. and Li, Y. (2022) Heterologous biosynthesis of isobavachalcone in tobacco based on in planta screening of
prenyltransferases.
Frontiers in Plant Science, DOI:10.3389/fpls.2022.1034625
Abstract
Bashir, K., Todaka, D., Rasheed, S., Matsui, A., Ahmad, Z., Sako, K., Utsumi, Y., Vu, A.T., Tanaka, M., Takahashi, S., Ishida, J., Tsuboi, Y., Watanabe, S., Kanno, Y., Ando, E., Shin, K-C., Seito, M., Motegi, H., Sato, M., Li, R., Kikuchi, S., Fujita, M., Kusano, M., Kobayashi, M., Habu, Y., Nakano, A., Kawaura, K., Kikuchi, J., Saito, K., Hirai, M.Y., Seo, M., Shinozaki, K., Kinoshita, T. and Seki, M. (2022) Ethanol-Mediated Novel Survival Strategy against Drought Stress in Plants.
Plant Cell Physiol., DOI:10.1093/pcp/pcac114.
Abstract
Gunji, S., Kawade, K., Tabeta, H., Horiguchi, G., Oikawa, A., Asaoka, M., Hirai, M.Y.,Tsukaya, H. and Ferjani, A. (2022) Tissue-targeted PPi hydrolysis in a
fugu5 mutant reveals that excess PPi triggers developmental defects in a cell-autonomous manner.
Frontiers in Plant Science, DOI:10.3389/fpls.2022.945225
Abstract
Ito, T., Kitaiwa,T., Nishizono, K.,Umahashi, M., Miyaji, S.,Agake, S., Kuwahara, K., Yokoyama, T., Fushinobu, S., Maruyama-Nakashita, A., Sugiyama, R., Sato, M., Inaba, J., Hirai, M.Y. and Ohkama-Ohtsu, N. (2022) Glutathione degradation activity of γ‐glutamyl peptidase 1 manifests its dual roles in primary and secondary sulfur metabolism in Arabidopsis.
The Plant Journal, DOI:10.1111/tpj.15912
Abstract
Kurihara, O.E., Ali, A., Hiramoto, M., Kurihara, Y., Abouleila, Y., Abdelazem, E.M., Kawai, T., Makita, Y., Kawashima, M., Esaki, T., Shimada, H., Mori,T., Hirai, M.Y., Higaki, T., Hasezawa, S., Shimizu, Y., Masujima, T. and Matsui, M.(2022) Tracking metabolites at single-cell resolution reveals metabolic dynamics during plant mitosis.
Plant Physiol., 189: 459–464, DOI:10.1093/plphys/kiac093
Abstract
Uzaki, M., Yamamoto, K., Murakami, A., Fuji, Y., Ohnishi, M., Ishizaki, K., Fukaki, H., Hirai, M.Y. and Mimura, T.(2022) Differential regulation of fluorescent alkaloid metabolism between idioblast and lacticifer cells during leaf development in
Catharanthus roseus seedlings.
J. Plant Res., DOI: 10.1007/s10265-022-01380-1
Abstract
Siriwach, R., Matsuzaki, J., Saito, T., Nishimura, H., Isozaki, M., Isoyama, Y., Sato, M., Arita, M., Akaho, S., Higashide, T., Yano, K., and Hirai, M.Y.(2022) Assessment of greenhouse tomato anthesis rate through metabolomics using LASSO regularized linear regression model.
Front. Mol. Biosci.9: 839051, DOI: 10.3389/fmolb.2022.839051
Abstract
Nishiumi, S., Izumi, Y., Hirayama, A., Takahashi, M., Nakao, M., Hata, K., Saigusa, D., Hishinuma, E., Matsukawa, N., Tokuoka, S.M., Kita, Y., Hamano, F., Okahashi, N., Ikeda, K., Nakanishi, H., Saito, K., Hirai, M.Y., Yoshida, M., Oda, Y. and Matsuda, M.(2022) Comparative Evaluation of Plasma Metabolomic Data from Multiple Laboratories.
Metabolites, DOI:10.3390/metabo12020135
Abstract
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