Metabolic Systems Research Team

Laboratories

Publications

2017

Original Papers

Vergara, F., Itouga, M., Becerra, R.G., Hirai, M.Y., Ordaz-Ortiz, J.J., and Winkler, R.(2018) Funaria hygrometrica Hedw. elevated tolerance to D2O: its use for the production of highly deuterated metabolites.Planta., 247 ; 405-412, DOI: 10.3732/ajb.1600419.

Abstract

Arae, T., Isai, S., Sakai, A., Mineta, K., Hirai, M.Y., Suzuki, Y., Kanaya, S., Yamaguchi, J., Naito, S. and Chiba, Y. (2017) Co-ordinated Regulations of mRNA Synthesis and Decay during Cold Acclimation in Arabidopsis Cells.Plant and Cell Physiology, 58 : 1090-1102, DOI: 10.1093/pcp/pcx059.

Abstract

Miwa, A., Sawada, Y., Tamaoki, D., Hirai, M.Y., Kimura, M., Sato, K. and Nishiuchi, T. (2017) Nicotinamide mononucleotide and related metabolites induce disease resistance against fungal phytopathogens in Arabidopsis and barley.Scientific Reports, 7 : 6389, DOI: 10.1038/s41598-017-06048-8.

Abstract

Vergara, F., Rymen, B., Kuwahara, A., Sawada, Y., Sato, M. and Hirai, M.Y. (2017) Autopolyploidization, geographic origin, and metabolome evolution in Arabidopsis thaliana.Am. J. Bot., 104(5), DOI: 10.3732/ajb.1600419.

Abstract

Okamura, E. and Hirai, M.Y. (2017) Novel regulatory mechanism of serine biosynthesis associated with 3-phosphoglycerate dehydrogenase in Arabidopsis thaliana.Sci. Rep., 7 : 3533, DOI: 10.1038/s41598-017-03807-5.

Abstract

Sawada, Y., Tsukaya, H., Li, Y., Sato, M., Kawade, K. and Hirai, M.Y. (2017) A novel method for single-grain-based metabolic profiling of Arabidopsis seed. Metabolomics, 13 : 75, DOI: 10.1007/s11306-017-1211-1.

Abstract

Osanai, T., Kuwahara, A., Otsuki, H., Saito, K. and Hirai, M.Y. (2017) ACR11 is an activator of plastid-type glutamine synthetase GS2 in Arabidopsis thaliana. Plant Cell Physiol., DOI: 10.1093/pcp/pcx033.

Abstract

Takeya, M., Hirai, M.Y. and Osanai, T. (2017) Allosteric inhibition of phosphoenolpyruvate carboxylases is determined by a single amino acid residue in cyanobacteria. Sci. Rep., 7 : 41080, DOI: 10.1038/srep41080.

Abstract

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2016

Original Papers

Tomita, Y., Yoshioka, K., Iijima, H., Nakashima, A., Iwata, O., Suzuki, K., Hasunuma, T., Kondo, A., Hirai, M.Y. and Osanai, T. (2016) Succinate and lactate production from Euglena gracilis during dark, anaerobic conditions. Front. Microbiol., 7 : 2050, DOI: 10.3389/fmicb.2016.02050.

Abstract

Ueda, S., Kawamura, Y., Iijima, H., Nakajima, M., Shirai, T., Okamoto, M., Kondo, A., Hirai, M.Y. and Osanai, T. (2016) Anionic metabolite biosynthesis enhanced by potassium under dark, anaerobic conditions in cyanobacteria. Sci. Rep., 6 : 32354, DOI: 10.1038/srep32354.

Abstract

Iijima, H., Shirai, T., Okamoto, M., Pinto, F., Tamagnini. P., Hasunuma, T., Kondo, A., Hirai, M.Y. and Osanai, T. (2016) Metabolomics-based analysis revealing the alteration of primary carbon metabolism by the genetic manipulation of a hydrogenase HoxH in Synechocystis sp. PCC 6803. Algal Res., 18 : 305-313., DOI: 10.1016/j.algal.2016.06.026.

Abstract

Yamada, M., Iwanaga, M., Sriyudthsak, K., Hirai, M.Y. and Shiraishi, F. (2016) Investigation of kinetic-order sensitivities in metabolic reaction networks. Journal of Theoretical Biology., 415 : 32-40., DOI: 10.1016/j.jtbi.2016.12.001.

Abstract

Miyawaki, A., Sriyudthsak, K., Hirai, M.Y. and Shiraishi, F. (2016) A new parametric method to smooth time-series data of metabolites in metabolic networks. Mathematical Biosciences., 282 : 21-33., DOI: 10.1016/j.mbs.2016.09.011.

Abstract

Sriyudthsak, K., Mejia, R.F., Arita, M. and Hirai, M.Y. (2016) PASMet: a web-based platform for prediction, modelling and analyses of metabolic systems. Nucleic Acids Res., 44(W1) : W205-W211., DOI: 10.1093/nar/gkw415.(Epub 2016 May 12.)

Abstract PDF

Sriyudthsak, K., Shiraishi, F. and Hirai, M.Y. (2016) Mathematical modeling and dynamic simulation of metabolic reaction systems using metabolome time series data. Frontiers in Molecular Biosciences., 3 : 1-11., DOI: 10.3389/fmolb.2016.00015.

Abstract PDF

Osanai, T., Iijima, H. and Hirai, M.Y. (2016) Understanding sugar catabolism in unicellular cyanobacteria toward the application in biofuel and biomaterial production. Subcellular Biochemistry., 86 : 511-523., DOI: 10.1007/978-3-319-25979-6_20.

Abstract

Kawahigashi, H., Kasuga, S., Sawada, Y., Yonemaru, J.-i., Ando, T., Kanamori, H., Wu, J., Mizuno, H., Momma, M., Fujimoto, Z., Hirai, M.Y. and Matsumoto, T. (2016) The sorghum gene for leaf color changes upon wounding (P) encodes a flavanone 4-reductase in the 3-deoxyanthocyanidin biosynthesis pathway. G3: Genes|Genomes|Genetics., 6 : 1439-1447., DOI: 10.1534/g3.115.026104.

Abstract

Nakabayashi, R., Sawada, Y., Aoyagi, M., Yamada, Y., Hirai, M.Y., Sakurai, T., Kamoi, T., Rowan, D.D. and Saito, K. (2016) Chemical assignment of structural isomers of sulfur-containing metabolites in garlic by liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry. Journal of Nutrition., 146 : 397S-402S. DOI: 10.3945/jn.114.202317.(Epub 2016 Jan 13.)

Abstract

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