Publications
2021-present ｜ 2023 ｜ 2022 ｜ 2021 ｜ 2005-2020 ｜
2023
Original Papers
Kawade, K., Tabeta, H., Ferjani, A. and Hirai, M.Y.(2023) The Roles of Functional Amino Acids in Plant Growth and Development Plant Cell Physiol.,DOI:10.1093/pcp/pcad071. Uchida, K., Kim, J.S., Sato, M., Tabeta, H., Mochida, K. and Hirai, M.Y.(2023) A metabolome genome-wide association study implicates histidine N-pi-methyltransferase as a key enzyme in N-methylhistidine biosynthesis in Arabidopsis thaliana Front. Plant Sci.,DOI:10.3389/fpls.2023.1201129. Fuji, Y., Uchida, K., Akashi, T., Ohtsuki, T., Matsufuji, H. and Hirai, M.Y.(2023) Molecular Identification of UDP-Sugar Dependent Glycosyltransferase and Acyltransferase Involved in the Phenylethanoid Glycoside Biosynthesis Induced by Methyl Jasmonate in Sesamum indicum L. Plant Cell Physiol.,DOI:10.1093/pcp/pcad053. Miyamoto, H., Shigeta, K., Suda, W., Ichihashi, Y., Nihei, N., Matsuura, M., Tsuboi, A., Tominaga, N., Aono, M., Sato, M., Taguchi, S., Nakaguma, T., Tsuji, N., Ishii, C., Matsushita, T., Shindo, C., Ito, T., Kato, T., Kurotani, A., Shima, H., Moriya, S., Wada, S., Horiuchi, S., Satoh, T., Mori, K., Nishiuchi, T., Miyamoto, H., Kodama, H., Hattori, M., Ohno, H., Kikuchi, K. and Hirai, M.Y.(2023) An agroecological structure model of compost—soil—plant interactions for sustainable organic farming ISME Commun,DOI:10.1038/s43705-023-00233-9. Uchida, K. and Hirai, M.Y.(2023) A simple method for creating transgenic pea hairy roots using a Japanese pea cultivar and a Japanese Rhizobium radiobacter strain Plant Biotechnol., DOI:10.5511/plantbiotechnology.22.1219c Tojo, H., Tabeta, H., Gunji, S., Hirai, M.Y., David, P., Javot, H. and Ferjani, A.(2023). Roles of type II H+-PPases and PPsPase1/PECP2 in early developmental stages and PPi homeostasis of Arabidopsis thalianaFront. Plant Sci., 14:1031426., DOI:10.3389/fpls.2023.1031426 Tabeta, H., Gunji, S., Kawade, K. and Ferjani, A.(2023). Leaf-size control beyond transcription factors: Compensatory mechanismsFront. Plant Sci., 13:1024945., DOI:10.3389/fpls.2022.1024945 Toyooka, K., Goto,Y., Hashimoto, K., Wakazaki, M., Sato, M. and Hirai, M.Y.(2023) Endoplasmic Reticulum Bodies in the Lateral Root Cap are Involved in the Direct Transport of Beta-Glucosidase to Vacuoles Plant and Cell Physiology, pcac177, DOI:10.1093/pcp/pcac1772022
Original Papers
Matsuse, K., Abdelrahman, M., Ariyanti, N. A., Tsuji, F., Hirata, S., Nakajima, T., Sato, M., Hirai, M.Y., Manochai, B. and Shigyo, M.(2022). Targeted Metabolome Profiling of Indonesian Shallots and Japanese Long-Day/Short-Day Bulb Onions. Merabolites, DOI:10.3390/metabo12121260 Tabeta, H., Higashi, Y., Okazaki, Y., Toyooka, K., Wakazaki, M., Sato, M., Saito, K., Hirai, M.Y. and Ferjani, A. (2022). Skotomorphogenesis exploits threonine to promote hypocotyl elongation. Quantitative Plant Biology, DOI:10.1017/qpb.2022.19 Guo, L., Zhao, W., Wang, Y., Yang, Y., Wei, C., Guo, J., Dai, J., Hirai, M.Y., Bao, A., Yang, Z., Chen, H. and Li, Y. (2022) Heterologous biosynthesis of isobavachalcone in tobacco based on in planta screening of prenyltransferases.Frontiers in Plant Science, DOI:10.3389/fpls.2022.1034625 Bashir, K., Todaka, D., Rasheed, S., Matsui, A., Ahmad, Z., Sako, K., Utsumi, Y., Vu, A.T., Tanaka, M., Takahashi, S., Ishida, J., Tsuboi, Y., Watanabe, S., Kanno, Y., Ando, E., Shin, K-C., Seito, M., Motegi, H., Sato, M., Li, R., Kikuchi, S., Fujita, M., Kusano, M., Kobayashi, M., Habu, Y., Nakano, A., Kawaura, K., Kikuchi, J., Saito, K., Hirai, M.Y., Seo, M., Shinozaki, K., Kinoshita, T. and Seki, M. (2022) Ethanol-Mediated Novel Survival Strategy against Drought Stress in Plants Plant Cell Physiol., DOI:10.1093/pcp/pcac114. Gunji, S., Kawade, K., Tabeta, H., Horiguchi, G., Oikawa, A., Asaoka, M., Hirai, M.Y.,Tsukaya, H. and Ferjani, A. (2022) Tissue-targeted PPi hydrolysis in a fugu5 mutant reveals that excess PPi triggers developmental defects in a cell-autonomous manner.Frontiers in Plant Science, DOI:10.3389/fpls.2022.945225 Ito, T., Kitaiwa,T., Nishizono, K.,Umahashi, M., Miyaji, S.,Agake, S., Kuwahara, K., Yokoyama, T., Fushinobu, S., Maruyama-Nakashita, A., Sugiyama, R., Sato, M., Inaba, J., Hirai, M.Y. and Ohkama-Ohtsu, N. (2022) Glutathione degradation activity of γ‐glutamyl peptidase 1 manifests its dual roles in primary and secondary sulfur metabolism in Arabidopsis. The Plant Journal, DOI:10.1111/tpj.15912 Kurihara, O.E., Ali, A., Hiramoto, M., Kurihara, Y., Abouleila, Y., Abdelazem, E.M., Kawai, T., Makita, Y., Kawashima, M., Esaki, T., Shimada, H., Mori,T., Hirai, M.Y., Higaki, T., Hasezawa, S., Shimizu, Y., Masujima, T. and Matsui, M.(2022) Tracking metabolites at single-cell resolution reveals metabolic dynamics during plant mitosis. Plant Physiol., 189: 459–464, DOI:10.1093/plphys/kiac093 Uzaki, M., Yamamoto, K., Murakami, A., Fuji, Y., Ohnishi, M., Ishizaki, K., Fukaki, H., Hirai, M.Y. and Mimura, T.(2022) Differential regulation of fluorescent alkaloid metabolism between idioblast and lacticifer cells during leaf development in Catharanthus roseus seedlings. J. Plant Res., DOI: 10.1007/s10265-022-01380-1 Siriwach, R., Matsuzaki, J., Saito, T., Nishimura, H., Isozaki, M., Isoyama, Y., Sato, M., Arita, M., Akaho, S., Higashide, T., Yano, K., and Hirai, M.Y.(2022) Assessment of greenhouse tomato anthesis rate through metabolomics using LASSO regularized linear regression model. Front. Mol. Biosci.9: 839051, DOI: 10.3389/fmolb.2022.839051 Nishiumi, S., Izumi, Y., Hirayama, A., Takahashi, M., Nakao, M., Hata, K., Saigusa, D., Hishinuma, E., Matsukawa, N., Tokuoka, S.M., Kita, Y., Hamano, F., Okahashi, N., Ikeda, K., Nakanishi, H., Saito, K., Hirai, M.Y., Yoshida, M., Oda, Y. and Matsuda, M.(2022) Comparative Evaluation of Plasma Metabolomic Data from Multiple Laboratories. Metabolites, DOI:10.3390/metabo120201352021
Original Papers
Ahmad, Z., Bashir, K., Matsui, A., Tanaka, M., Sasaki, R., Oikawa, A., Hirai, M.Y., Chaomurilege, Zu, Y., Kawai-Yamada, M., Rashid, B., Husnain, T. and Seki, M.(2021) Overexpression of nicotinamidase 3 (NIC3) gene and the exogenous application of nicotinic acid (NA) enhance drought tolerance and increase biomass in Arabidopsis. Plant Mol Biol., DOI:10.1007/s11103-021-01179-z. Tabeta, H., Watanabe, S., Fukuda, K., Gunji, S., Asaoka, M., Hirai, M.Y., Seo, M., Tsukaya, H. and Ferjani, A.(2021) An auxin signaling network translates low-sugar-state input into compensated cell enlargement in the fugu5 cotyledon. PLoS Genet, DOI:10.1371/journal.pgen.1009674. Uchida, K., Akashi, T. and Hirai, M.Y.(2021) Identification and characterization of glycosyltransferases catalyzing direct xanthone 4-C-glycosylation in Hypericum perforatum. FEBS Lett., 595:2608-2615, DOI:10.1002/1873-3468.14179. Sugiyama, R., Li, R., Kuwahara, A., Nakabayashi, R., Sotta, N., Mori, T., Ito, T., Ohkama-Ohtsu, N., Fujiwara, T., Saito, K., Nakano, R.T., Bednarek, P. and Hirai, M.Y.(2021) Retrograde sulfur flow from glucosinolates to cysteine in Arabidopsis thaliana. PNAS, 118: e2017890118, DOI:10.1073/pnas.2017890118. Okamura, E., Ohtaka, K., Nishihama, R., Uchida, K., Kuwahara, A., Mochida, K. and Hirai, M.Y. (2021) Diversified amino acid-mediated allosteric regulation of phosphoglycerate dehydrogenase for serine biosynthesis in land plants. Biochem. J., 478: 2217-2232, DOI:10.1042/BCJ20210191. Watanabe, M., Chiba, Y. and Hirai, M.Y.(2021) Metabolism and Regulatory Functions of O-Acetylserine, S-Adenosylmethionine, Homocysteine, and Serine in Plant Development and Environmental Responses.Front. Plant Sci., DOI:10.3389/fpls.2021.643403.Echeverria, A., Larrainzar, E., Li, W., Watanabe, Y., Sato, M., Tran, C.D., Moler, J.A., Hirai, M.Y., Sawada, Y., Tran, L.-S.P. and Gonzalez, E.M. (2021) Medicago sativa and Medicago truncatula Show Contrasting Root Metabolic Responses to Drought. Front. Plant Sci., DOI:10.3389/fpls.2021.652143.
Nguyen, K.-O.T., Nguyen, N.-L., Pham, H.-N., Sawada, Y., Hirai, M.Y., Dauwe, R., and Dijoux-Franca, M.-G. (2021) Development of a Pteris vittata L. compound database by widely targeted metabolomics profiling. Biomedical Chromatography, DOI:10.1002/bmc.5110. Abdelrahman, M., Hirata, S., Mukae, T., Yamada, T., Sawada, Y., El-Syaed, M., Yamada, Y., Sato, M., Hirai, M.Y. and Shigyo, M. (2021) Comprehensive metabolite profiling in genetic resources of garlic (Allium sativum L.) collected worldwide. Molecules, 26: 1415, DOI:10.3390/molecules26051415. Kajiya-Kanegae, H., Ohyanagi, H., Ebata, T., Tanizawa, Y., Onogi, A., Sawada, Y., Hirai, M.Y., Wang, Z.-X., Han, B., Toyoda, A., Fujiyama, A., Iwata, H., Tsuda, K., Suzuki, T., Nosaka-Takahashi, M., Nonomura, K.-i., Nakamura, Y., Kawamoto, S., Kurata, N. and Sato, Y. (2021) OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species. Rice, 14: 24, DOI:10.1186/s12284-021-00468-x. Parimalam, S.S., Abdelmoez, M.N., Tsuchida, A., Sotta, N., Tanaka, M., Kuromori, T., Fujiwara, T., Hirai, M.Y., Yokokawa, R., Oguchi, Y., Shintaku, H. (2021) Targeted permeabilization of cell wall and extraction of charged molecules from single cells in intact plant clusters using a focused electric field. Analyst, DOI:10.1039/D0AN02163F. Okamura,M., Hirai,M.Y., Sawada,Y., Okamoto,M., Oikawa,A., Sasaki, R., Arai-Sanoh,Y., Mukouyama,T., Adachi,S. and Kondo, M.(2021) Metabolite-level carbon-flow analysis reveals that starch synthesis from hexose is a limiting factor in a high-yielding rice cultivar Journal of Experimental Botany, DOI:10.1093/jxb/erab016