Metabolic Systems Research Team

Laboratories

Publications

2024

Editorial

Li-Beisson, Y., Hirai, M.Y., Nakamura, Y. (2024) Plant metabolomics. Journal of Experimental Botany 75: 1651–1653.

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Original Papers

Tabeta, H. and Hirai, M.Y.(2024) L-2-Aminopimelic acid acts as an auxin mimic to induce lateral root formation across diverse plant species. FEBS Letters. DOI:10.1002/1873-3468.14908

Abstract

Nguyen, P.N., Do, T.Y., Do, T.N., Gontier, E., Nguyen, H.T.L., Thi, V.A.L., Mai, N.T.P., Sato, M., Hirai, M.Y. and Nguyen, K.-O.T.(2024) Widely targeted metabolomics reveals the species-specific, matureness-specific and post-harvest-specific discriminations in the chemical profiles of Vietnamese endemic golden camellias. Int J Food Sci Technol. DOI:10.1111/ijfs.17071

Abstract

Uzaki, M., Mori, T., Sato, M., Wakazaki, M., Takeda-Kamiya, N., Yamamoto, K., Murakami, A., Guerrero, D.A.S., Shichijo, C., Ohnishi, M., Ishizaki, K., Fukaki, H., O'Connor, S.E., Toyooka, K., Mimura, T. and Hirai, M.Y.(2024) Integration of cell differentiation and initiation of monoterpenoid indole alkaloid metabolism in seed germination of Catharanthus roseus. New Phytol. DOI:10.1111/nph.19662

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Miyaji, S., Ito, T., Kitaiwa, T., Nishizono, K., Agake, S.-I., Harata, H., Aoyama, H., Umahashi, M., Sato, M., Inaba, J., Fushinobu, S., Yokoyama, T., Murayama-Nakashita, A., Hirai, M.Y. and Ohkama-Ohtsu, N.(2024) N2-Acetylornithine deacetylase functions as a Cys-Gly dipeptidase in the cytosolic glutathione degradation pathway in Arabidopsis thaliana Plant J.. DOI: 10.1111/tpj.16700.

Abstract

Wang, M., Tabeta, H., Ohtaka, K., Kuwahara, A., Nishihama, R., Ishikawa, T., Toyooka, K., Sato, M., Wakazaki, M., Akashi, H., Tsugawa, H., Shoji, T., Okazaki, Y., Yoshida, K., Sato, R., Ferjani, A., Kohchi, T., Hirai, M.Y. (2024) The phosphorylated pathway of serine biosynthesis affects sperm, embryo, and sporophyte development, and metabolism in Marchantia polymorpha. Commun Biol. DOI: 10.1038/s42003-023-05746-6.

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2023

Editorial

Hirai, M.Y., Mizutani, M. and Nakamura, Y.(2023) Revisiting Plant Metabolite Functions. Plant Cell Physiol.,DOI:10.1093/pcp/pcad155.

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Original Papers

Horikoshi, M., Harada, K., Tsuno, S., Kitaguchi, T., Hirai, M.Y., Matsumoto, M., Terada, S. and Tsuboi, T.(2023)Distinct lactate metabolism between hepatocytes and myotubes revealed by live cell imaging with genetically encoded indicators.Biochem Biophys Res Commun.,DOI:10.1016/j.bbrc.2023.149416.

Abstract

Nguyen, K.-O.T., Do, T.-N, Dang, K.-P., Sato, M. and Hirai, M.Y.(2023)Single-grain-based widely targeted metabolomics profiling of sixty-four accessions of Japanese wild soybean (Glycin soja Sieb. Et Zucc.). IFST.,DOI:10.1111/ijfs.16654.

Abstract

Tsuno, S., Harada, K., Horikoshi.M., Mita, M., Kitaguchi, T., Hirai, M.Y., Matsumoto, M. and Tsuboi, T.(2023) Mitochondrial ATP concentration decreases immediately after glucose administration to glucose-deprived hepatocytes. FEBS Open Bio.,DOI:10.1002/2211-5463.13744.

Abstract

Kawade, K., Tabeta, H., Ferjani, A. and Hirai, M.Y.(2023) The Roles of Functional Amino Acids in Plant Growth and Development. Plant Cell Physiol.,DOI:10.1093/pcp/pcad071.

Abstract

Uchida, K., Kim, J.S., Sato, M., Tabeta, H., Mochida, K. and Hirai, M.Y.(2023) A metabolome genome-wide association study implicates histidine N-pi-methyltransferase as a key enzyme in N-methylhistidine biosynthesis in Arabidopsis thaliana. Front. Plant Sci.,DOI:10.3389/fpls.2023.1201129.

Abstract

Fuji, Y., Uchida, K., Akashi, T., Ohtsuki, T., Matsufuji, H. and Hirai, M.Y.(2023) Molecular Identification of UDP-Sugar Dependent Glycosyltransferase and Acyltransferase Involved in the Phenylethanoid Glycoside Biosynthesis Induced by Methyl Jasmonate in Sesamum indicum L. Plant Cell Physiol.,DOI:10.1093/pcp/pcad053.

Abstract

Miyamoto, H., Shigeta, K., Suda, W., Ichihashi, Y., Nihei, N., Matsuura, M., Tsuboi, A., Tominaga, N., Aono, M., Sato, M., Taguchi, S., Nakaguma, T., Tsuji, N., Ishii, C., Matsushita, T., Shindo, C., Ito, T., Kato, T., Kurotani, A., Shima, H., Moriya, S., Wada, S., Horiuchi, S., Satoh, T., Mori, K., Nishiuchi, T., Miyamoto, H., Kodama, H., Hattori, M., Ohno, H., Kikuchi, K. and Hirai, M.Y.(2023) An agroecological structure model of compost—soil—plant interactions for sustainable organic farming. ISME Commun,DOI:10.1038/s43705-023-00233-9.

Abstract

Uchida, K. and Hirai, M.Y.(2023) A simple method for creating transgenic pea hairy roots using a Japanese pea cultivar and a Japanese Rhizobium radiobacter strain. Plant Biotechnol., DOI:10.5511/plantbiotechnology.22.1219c

Abstract

Tojo, H., Tabeta, H., Gunji, S., Hirai, M.Y., David, P., Javot, H. and Ferjani, A.(2023). Roles of type II H+-PPases and PPsPase1/PECP2 in early developmental stages and PPi homeostasis of Arabidopsis thalianaFront. Plant Sci., 14:1031426., DOI:10.3389/fpls.2023.1031426

Abstract

Tabeta, H., Gunji, S., Kawade, K. and Ferjani, A.(2023). Leaf-size control beyond transcription factors: Compensatory mechanismsFront. Plant Sci., 13:1024945., DOI:10.3389/fpls.2022.1024945

Abstract

Toyooka, K., Goto,Y., Hashimoto, K., Wakazaki, M., Sato, M. and Hirai, M.Y.(2023) Endoplasmic Reticulum Bodies in the Lateral Root Cap are Involved in the Direct Transport of Beta-Glucosidase to Vacuoles. Plant and Cell Physiology, pcac177, DOI:10.1093/pcp/pcac177

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2022

Original Papers

Matsuse, K., Abdelrahman, M., Ariyanti, N. A., Tsuji, F., Hirata, S., Nakajima, T., Sato, M., Hirai, M.Y., Manochai, B. and Shigyo, M.(2022). Targeted Metabolome Profiling of Indonesian Shallots and Japanese Long-Day/Short-Day Bulb Onions. Merabolites, DOI:10.3390/metabo12121260

Abstract

Tabeta, H., Higashi, Y., Okazaki, Y., Toyooka, K., Wakazaki, M., Sato, M., Saito, K., Hirai, M.Y. and Ferjani, A. (2022). Skotomorphogenesis exploits threonine to promote hypocotyl elongation. Quantitative Plant Biology, DOI:10.1017/qpb.2022.19

Abstract

Guo, L., Zhao, W., Wang, Y., Yang, Y., Wei, C., Guo, J., Dai, J., Hirai, M.Y., Bao, A., Yang, Z., Chen, H. and Li, Y. (2022) Heterologous biosynthesis of isobavachalcone in tobacco based on in planta screening of prenyltransferases.Frontiers in Plant Science, DOI:10.3389/fpls.2022.1034625

Abstract

Bashir, K., Todaka, D., Rasheed, S., Matsui, A., Ahmad, Z., Sako, K., Utsumi, Y., Vu, A.T., Tanaka, M., Takahashi, S., Ishida, J., Tsuboi, Y., Watanabe, S., Kanno, Y., Ando, E., Shin, K-C., Seito, M., Motegi, H., Sato, M., Li, R., Kikuchi, S., Fujita, M., Kusano, M., Kobayashi, M., Habu, Y., Nakano, A., Kawaura, K., Kikuchi, J., Saito, K., Hirai, M.Y., Seo, M., Shinozaki, K., Kinoshita, T. and Seki, M. (2022) Ethanol-Mediated Novel Survival Strategy against Drought Stress in Plants. Plant Cell Physiol., DOI:10.1093/pcp/pcac114.

Abstract

Gunji, S., Kawade, K., Tabeta, H., Horiguchi, G., Oikawa, A., Asaoka, M., Hirai, M.Y.,Tsukaya, H. and Ferjani, A. (2022) Tissue-targeted PPi hydrolysis in a fugu5 mutant reveals that excess PPi triggers developmental defects in a cell-autonomous manner.Frontiers in Plant Science, DOI:10.3389/fpls.2022.945225

Abstract

Ito, T., Kitaiwa,T., Nishizono, K.,Umahashi, M., Miyaji, S.,Agake, S., Kuwahara, K., Yokoyama, T., Fushinobu, S., Maruyama-Nakashita, A., Sugiyama, R., Sato, M., Inaba, J., Hirai, M.Y. and Ohkama-Ohtsu, N. (2022) Glutathione degradation activity of γ‐glutamyl peptidase 1 manifests its dual roles in primary and secondary sulfur metabolism in Arabidopsis. The Plant Journal, DOI:10.1111/tpj.15912

Abstract

Kurihara, O.E., Ali, A., Hiramoto, M., Kurihara, Y., Abouleila, Y., Abdelazem, E.M., Kawai, T., Makita, Y., Kawashima, M., Esaki, T., Shimada, H., Mori,T., Hirai, M.Y., Higaki, T., Hasezawa, S., Shimizu, Y., Masujima, T. and Matsui, M.(2022) Tracking metabolites at single-cell resolution reveals metabolic dynamics during plant mitosis. Plant Physiol., 189: 459–464, DOI:10.1093/plphys/kiac093

Abstract

Uzaki, M., Yamamoto, K., Murakami, A., Fuji, Y., Ohnishi, M., Ishizaki, K., Fukaki, H., Hirai, M.Y. and Mimura, T.(2022) Differential regulation of fluorescent alkaloid metabolism between idioblast and lacticifer cells during leaf development in Catharanthus roseus seedlings. J. Plant Res., DOI: 10.1007/s10265-022-01380-1

Abstract

Siriwach, R., Matsuzaki, J., Saito, T., Nishimura, H., Isozaki, M., Isoyama, Y., Sato, M., Arita, M., Akaho, S., Higashide, T., Yano, K., and Hirai, M.Y.(2022) Assessment of greenhouse tomato anthesis rate through metabolomics using LASSO regularized linear regression model. Front. Mol. Biosci.9: 839051, DOI: 10.3389/fmolb.2022.839051

Abstract

Nishiumi, S., Izumi, Y., Hirayama, A., Takahashi, M., Nakao, M., Hata, K., Saigusa, D., Hishinuma, E., Matsukawa, N., Tokuoka, S.M., Kita, Y., Hamano, F., Okahashi, N., Ikeda, K., Nakanishi, H., Saito, K., Hirai, M.Y., Yoshida, M., Oda, Y. and Matsuda, M.(2022) Comparative Evaluation of Plasma Metabolomic Data from Multiple Laboratories. Metabolites, DOI:10.3390/metabo12020135

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